PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000587648
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 323aa    MW: 36016.4 Da    PI: 8.4455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000587648genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
    MDP0000587648 14 KGPWSPEEDAKLKEYIERYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding43.29.2e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd+++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
    MDP0000587648  69 GEFSDEEDKIICNLFTNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.431966IPR017930Myb domain
SuperFamilySSF466893.1E-2711109IPR009057Homeodomain-like
SMARTSM007171.9E-131364IPR001005SANT/Myb domain
PfamPF002493.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-251569IPR009057Homeodomain-like
CDDcd001671.14E-91662No hitNo description
PROSITE profilePS5129416.5867117IPR017930Myb domain
SMARTSM007172.5E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2370117IPR009057Homeodomain-like
CDDcd001671.58E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE RYGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDKIIC NLFTNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI  120
SILPSQLLKS HSSSYRGNNT STSYYTQTRS FTNTLEPISF SQSLMSSTST NTAAASVLQV  180
PQESFVGRHM HQQHYQVKEN ILIFGGEASC CSSDGSYSNH QIREREYEYG GAYGGGGSGR  240
GGATNGEVKL HMGLKNYNCF TGFGGEQKIM ENNSSGNGGM WEDQARLDYG LEEIKQLLSS  300
TGSCNNFLLD EDKTQEKVMM YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.221322e-47fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387547.10.0PREDICTED: transcription factor RAX2-like
TrEMBLM5VQA21e-148M5VQA2_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-78myb domain protein 36