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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000587648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36016.4 Da PI: 8.4455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl MDP0000587648 14 KGPWSPEEDAKLKEYIERYGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 9.2e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd+++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ MDP0000587648 69 GEFSDEEDKIICNLFTNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.431 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.1E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 16.58 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-7 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE RYGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDKIIC NLFTNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI 120 SILPSQLLKS HSSSYRGNNT STSYYTQTRS FTNTLEPISF SQSLMSSTST NTAAASVLQV 180 PQESFVGRHM HQQHYQVKEN ILIFGGEASC CSSDGSYSNH QIREREYEYG GAYGGGGSGR 240 GGATNGEVKL HMGLKNYNCF TGFGGEQKIM ENNSSGNGGM WEDQARLDYG LEEIKQLLSS 300 TGSCNNFLLD EDKTQEKVMM YY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.22132 | 2e-47 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387547.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | M5VQA2 | 1e-148 | M5VQA2_PRUPE; Uncharacterized protein | ||||
STRING | POPTR_0006s12530.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-78 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000587648 |